Catarina Barata
Faculty
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Current Projects
| Acronym | Name | Funding | Dates |
|---|---|---|---|
| Deep Mutation | Deep Mutation-A CNN Model To Predict Genetic Mutations In Melanoma Patients | 2021-06|2024-05 | |
| HAVATAR | Healthcare Added-Value Applications of Tele-Autonomous Robots | FCT | 2021-03|2025-02 |
Closed Projects
| Acronym | Name | Funding | Dates |
|---|---|---|---|
| SPARSIS | Sparse Modeling and Estimation of Motion Fields | FCT | 2016-07|2019-12 |
| ADDI | Automatic Computer-based Diagnosis System for Dermoscopy Images | FCT | 2010-01|2013-09 |
[1] Catarina Barata, Eduardo Valle, Alceu Bissoto, "Even small correlation and diversity shifts pose dataset-bias issues", Pattern Recognition LettersOpen AccessVolume 179, Pages 87 - 93, 2024
[2] Zahra Mirikharaji, Kumar Abhishek, Alceu Bissoto, Catarina Barata, Sandra Avila, Eduardo Valle, M. E. Celebi, Ghassan Hamarneh, "A survey on deep learning for skin lesion segmentation", Medical Image Analysis Volume 88, 102863, 2023
[3] Catarina Barata, Veronica Rotemberg, Noel C. F. Codella, Philipp Tschandl, Christoph Rinner, Bengu Nisa Akay, Zoe Apalla, Giuseppe Argenziano, Allan Halpern, Aimilios Lallas, Caterina Longo, Josep Malvehy, Susana Puig, Cliff Rosendahl, H. Peter Soyer, Iris Zalaudek, Harald Kittler, "A reinforcement learning model for AI-based decision support in skin cancer", Nature Medicine volume 29, pages1941–1946 (2023), 2023
[4] Milad Niknejad, "Weakly Supervised Fire and Smoke Segmentation in Forest Images with CAM and CRF", 6th International Conference on Pattern Recognition (ICPR), pp. 442-448, 2022
[5] Tiffaney Tran, Niels K. Ternov, Jochen Weber, Catarina Barata, Elizabeth G. Berry, Hung Q. Doan, Ashfaq A. Marghood, Elizabeth V. Seiverling, Shelly Sinclair, Jennifer Stein, Elizabeth R. Stoos, Martin G. Tolsgaard, Maya Wolfensperger, Ralph P. Braun, Kelly C. Nelson, "Theory-Based Approaches to Support Dermoscopic Image Interpretation Education: A Review of the Literature", Dermatology Practical and Conceptual, 12(4): e2022188, October, 2022
[6] Tiffaney Tran, Niels K. Ternov, Jochen Weber, Catarina Barata, Elizabeth G. Berry, Hung Q. Doan, Ashfaq A. Marghood, Elizabeth V. Seiverling, Shelly Sinclair, Jennifer Stein, Elizabeth R. Stoos, Martin G. Tolsgaard, Maya Wolfensperger, Ralph P. Braun, Kelly C. Nelson, "Instructional Strategies to Enhance Dermoscopic Image Interpretation Education: a Review of the Literature", Dermatology Practical and Conceptual, 12(4): e2022189, October, 2022
[7] Roxana Daneshjou, Catarina Barata, Brigid Betz-Stablein, Emre M. Celebi, Noel Codella, Marc Combalia, Pascale Guitera, David Gutman, Allan Halpern, Brian Helba, Harald Kittler, Kivanc Kose, Konstantinos Liopyris, Josep Malvehy, Han Seung Seog, H. Peter Soyer, Eric R. Tkaczyk, Philipp Tschandl, Veronica M. Rotemberg, "Checklist for Evaluation of Image-Based Artificial Intelligence Reports in Dermatology: CLEAR Derm Consensus Guidelines from the International Skin Imaging Collaboration Artificial Intelligence Working Group", JAMA Dermatology, 158(1):90-96, January, 2022
[8] Sarah Haggenmüller, Roman C. Maron, Achim Hekler, Jochen S. Utikal, Catarina Barata, Raymond L. Barnhill, Helmut Beltraminelli, Carola Berking, Brigid Betz-Stablein, Andreas Blum, Stephan A. Braun, Richard Carr, Marc Combalia, Maria-Teresa Fernandez-Figueras, Gerardo Ferrara, Sylvie Fraitag, Lars E. French, Frank F. Gellrich, Kamran Ghoreschi, Matthias Goebeler, Pascale Guitera, Holger A. Haenssle, Sebastian Haferkamp, Lucie Heinzerling, Markus V. Heppt, Franz J. Hilke, Sarah Hobelsberger, Dieter Krahl, Heinz Kutzner, Aimilios Lallas, Konstantinos Liopyris, Mar Llamas-Velasco, Josep Malvehy, Friedegund Meier, Cornelia S.L. Müller, Alexander A. Navarini, Cristián Navarrete-Dechent, Antonio Perasole, Gabriela Poch, Sebastian Podlipnik, Luis Requena, Veronica M. Rotemberg, Andrea Saggini, Omar P. Sangueza, Carlos Santonja, Dirk Schadendorf, Bastian Schilling, Max Schlaak, Justin G. Schlager, Mildred Sergon, Wiebke Sondermann, H. Peter Soyer, Hans Starz, Wilhelm Stolz, Esmeralda Vale, Wolfgang Weyers, Alexander Zink, Eva Krieghoff-Henning, Jakob N. Kather, Christof von Kalle, Daniel B. Lipka, Stefan Fröhling, Axel Hauschild, Harald Kittler, Titus J. Brinker, "Skin cancer classification via convolutional neural networks: systematic review of studies involving human experts", European Journal of Cancer, vol. 156, pp. 202-216, October, 2021
[9] Catarina Barata, Jacinto Nascimento, Joao M. Lemos, Jorge Salvador Marques, "Sparse motion fields for trajectory prediction", Pattern Recognition, vol.110, February, 2021
[10] Carlos Santiago, Catarina Barata, Michele Sasdelli, Gustavo Carneiro, Jacinto Nascimento, "LOW: Training deep neural networks by learning optimal sample weights", Pattern Recognition, vol.110, February, 2021
[11] Catarina Barata, Emre M. Celebi, Jorge Salvador Marques, "Explainable Skin Lesion Diagnosis Using Taxonomies", Pattern Recognition, Volume 110, 107413, 2021
[12] Carlos Santiago, Catarina Barata, Michele Sasdelli, Gustavo Carneiro, Jacinto Nascimento, "LOW: Training Deep Neural Networks by Learning Optimal Sample Weights", Pattern Recognition, Elsevier, Vol.110 , 2020 - PDF
[13] Catarina Barata, Emre M. Celebi, Jorge Salvador Marques, "A Survey of Feature Extraction in Dermoscopy Image Analysis of Skin Cancer", IEEE Journal of Biomedical and Health Informatics (JBHI), 2018
[14] Jorge Salvador Marques, Catarina Barata, João Sanches, Patrícia Figueiredo, J. Miranda Lemos, "Artificial Intelligence in Radiology: From Image Processing to Diagnosis", Acta Radiológica Portuguesa, Vol. 30, No 2, pp 5-8, 2018 - PDF
[15] Catarina Barata, M. E. Celebi, Jorge Salvador Marques, "Development of Clinically Oriented System for Melanoma Diagnosis", Pattern Recognition, Vol. 69, pp. 270-285, September, 2017
[16] M. Ruela, Catarina Barata, Jorge Salvador Marques, J. Rozeira, "A System for the Detection of Melanomas in Dermoscopy Images using Shape and Symmetry Features", Computer Methods In Biomechanics And Biomedical Engineering: Imaging & Visualization, Vol. 5, Issue 2, pp. 127-137, May, 2017
[17] Catarina Barata, M. E. Celebi, Jorge Salvador Marques, J. Rozeira, "Clinically Inspired Analysis of Dermoscopy Images using a Generative Model", Computer Vision and Image Understanding (CVIU), Vol. 151, Issue C, pp. 124–137, October, 2016
[18] Catarina Barata, M. Celebi, Jorge Salvador Marques, "Improving Dermoscopy Image Classification Using Color Constancy", IEEE Journal of Biomedical and Health Informatics, Vol. 19, Issue 3, pp. 1146 - 1152, May, 2015
[19] Catarina Barata, M. Ruela, M. Francisco, T. Mendonca, Jorge Salvador Marques, "Two Systems for the Detection of Melanomas in Dermoscopy Images using Texture and Color Features", IEEE Systems Journal, Vol. 8, Issue 3, July 2013, pp. 965 - 979 , 2013 - PDF
[20] Catarina Barata, Jorge Salvador Marques, J. Rozeira, "A System for the Detection of Pigment Network in Dermoscopy Images Using Directional Filters", IEEE Transactions on Biomedical Engineering, vol. 59, 2744 - 2754, 2012
[1] T. Mendonca, P. M. Ferreira, A. R. Marcal, Catarina Barata, Jorge Salvador Marques, J. Rocha, J. Rozeira, "PH2 – A Public Database for the Analysis of Dermocopic Images", in Dermoscopy Image Analysis, M. Celebi, T. Mendonca & Jorge S. Marques (Eds.), CRC Press, 2015
[2] Catarina Barata, M. Celebi, Jorge Salvador Marques, "Towards a Robust Analysis of Dermoscopy Images Acquired under Different Conditions", in Dermoscopy Image Analysis, M. Celebi, T. Mendonca & Jorge S. Marques (Eds.), CRC Press, 2015
[3] Catarina Barata, M. Ruela, T. Mendonca, Jorge Salvador Marques, "A Bag of Features approach for the classification of melanomas in dermoscopy images: The role of color and texture descriptors", Computer Vision Techniques for the Diagnosis of Skin Cancer, Springer, chapter 3, 49-70, 2014 - PDF
[1] Carlos Santiago, Miguel Correia , Maria Rita Verdelho, Alceu Bissoto, Catarina Barata, "Global and Local Explanations for Skin Cancer Diagnosis Using Prototypes", Medical Image Computing and Computer Assisted Intervention (MICCAI) IMIMIC Workshop, 2023
[2] Lisa Kuhlmann, Milad Niknejad, Catarina Barata, Alexandre Bernardino, Gefei Zhang, "An Adversarial method for Semi-supervised Segmentation of Smoke and Fire in Images", Rousseau, JJ., Kapralos, B. (eds) Pattern Recognition, Computer Vision, and Image Processing. ICPR 2022 International Workshops and Challenges. ICPR 2022. Lecture Notes in Computer Science, vol 13644. Springer, Cham., 2023
[3] Sara Fernandes, Milad Niknejad, Catarina Barata, Alexandre Bernardino, "Forest Fires Identification Using Self-Supervised Learning", Rousseau, JJ., Kapralos, B. (eds) Pattern Recognition, Computer Vision, and Image Processing. ICPR 2022 International Workshops and Challenges. ICPR 2022. Lecture Notes in Computer Science, vol 13644. Springer, Cham., 2023
[4] Miguel Correia , Alceu Bissoto, Carlos Santiago, Catarina Barata, "XAI for Skin Cancer Detection with Prototypes and Non-Expert Supervision", Medical Image Computing and Computer Assisted Intervention (MICCAI) IMIMIC Workshop, 2023
[5] António Mendes, Catarina Barata, "Intrapatient Diagnosis for Melanoma Skin Cancer", Proc. of ISBI 2023 - 20th IEEE International Symposium on Biomedical Imaging, Cartagena de Indias, Colombia, 2023 - PDF
[6] Alceu Bissoto, Catarina Barata, Eduardo Valle, Sandra Avila, "Artifact-Based Domain Generalization of Skin Lesion Models", Computer Vision – ECCV 2022 Workshops. ECCV 2022. Lecture Notes in Computer Science, vol 13804. Springer, Cham., pp. 133—149, 2023
[7] Maria Rita Verdelho, Simão Gonçalves, Luísa Gonçalves, Catarina Costa, José M. Lopes, Margarida M. M. Coelho, Alexandre João, Paula Soares, Helena Pópulo, Catarina Barata, "Predictive Biomarkers in Melanoma: Detection of BRAF Mutation Using Dermoscopy", First MICCAI Workshop, AIIIMA 2022, and First MICCAI Workshop, MIABID 2022, held in Conjunction with MICCAI 2022, Singapore, 2022
[8] Pedro Bilro, Catarina Barata, Jorge Salvador Marques, "Pedestrian Trajectory Prediction Using LSTM and Sparse Motion Fields", Proc. of ICPR 2022 - 26th International Conference on Pattern Recognition, Montréal, Québec, pp. 3529-3535, 2022
[9] Bernardo Amaral, Milad Niknejad, Catarina Barata, Alexandre Bernardino, "Weakly Supervised Fire and Smoke Segmentation in Forest Images with CAM and CRF", Proc. of ICPR 2022 - 26th International Conference on Pattern Recognition, Montréal, Québec, pp. 442-448, 2022
[10] Laura Santos, Bárbara Silva, Filippo Maddaloni, Alice Geminiani, Arianna Caglio, Silvia Annunziata, Ivana Olivieri , Catarina Barata, José Santos-Victor, Alessandra Pedrocchi, "Sharing Worlds: Design of a Real-Time Attention Classifier for Robotic Therapy of ASD Children", Proc. of ICORR 2022 - IEEE International Conference on Rehabilitation Robotics, Rotterdam, The Netherlands, 2022
[11] Beatriz Alves, Catarina Barata, Jorge Salvador Marques, "Diagnosis of Skin Cancer Using Hierarchical Neural Networks and Metadata", Proc. of IbPRIA 2022 - 10th Iberian Conference on Pattern Recognition and Image Analysis, Aveiro, Portugal, 2022
[12] Maria Rita Verdelho, Catarina Barata, "On The Impact of Self-Supervised Learning in Skin Cancer Diagnosis", Proc. of ISBI 2022 - IEEE 19th International Symposium on Biomedical Imaging, Kolkata, India, 2022
[13] Catarina Barata, Carlos Santiago, "Improving the Explainability of Skin Cancer Diagnosis Using CBIR", Medical Image Computing and Computer Assisted Intervention – MICCAI 2021. Lecture Notes in Computer Science, vol. 12903, pp. 550-559, Springer, Cham, 2021
[14] Bernardo Amaral, Alexandre Bernardino, Catarina Barata, "Fire and Smoke Detection in Aerial Images", 26th Portuguese Conference on Pattern Recognition. Évora, 2020, 2020
[15] Catarina Barata, Carlos Santiago, "How Important Is Each Dermoscopy Image?", ISIC Skin Image Analysis Workshop at IEEE International Conference on Computer Vision and Pattern Recognition, Virtual Conference, 2020
[16] Catarina Barata, Mario Figueiredo, Jorge Salvador Marques, "Multiple Motion Fields for Multiple Types of Agents", Proc. IEEE International Conference on Image Processing (ICIP). Taipei, Taiwan, 2019 - PDF
[17] Bárbara Ferreira, Catarina Barata, Jorge Salvador Marques, "What is the Role of Annotations in the Detection of Dermoscopic Structures?", Conference on Pattern Recognition and Image Analysis. Madrid, Spain, 2019 - PDF
[18] Ana Portelo, Andrea Cavallaro, Catarina Barata, Jorge Salvador Marques, "Description and Recognition of Activity Patterns Using Sparse Vector Fields", Iberian Conference on Pattern Recognition and Image Analysis. Madrid, Spain, 2019 - PDF
[19] Catarina Barata, Emre M. Celebi, Jorge Salvador Marques, "Deep Attention Model for the Hierarchical Diagnosis of Skin Lesions", ISIC Skin Image Analysis Workshop at IEEE International Conference on Computer Vision and Pattern Recognition, Long Beach, California, 2019 - PDF
[20] Catarina Barata, Jacinto Nascimento, Jorge Salvador Marques, "Multiple Agents Representation Using Motion Fields", IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP). Brighton, UK, 2019 - PDF
[21] Catarina Barata, Jorge Salvador Marques, "Deep Learning for Skin Cancer Diagnosis with Hierarchical Architectures", IEEE International Symposium on Biomedical Imaging (ISBI). Venice, Italy, 2019 - PDF
[22] Catarina Barata, J. M. Lemos, Jorge Salvador Marques, "Estimation of Space-Varying Covariance Matrices", Proc. of IEEE International Conference on Image Processing (ICIP). Athens, Greece, 2018
[23] A. Portelo, Jorge Salvador Marques, Catarina Barata, J. M. Lemos, "Distributed estimation of vector fields", Advanced Concepts for Intelligent Vision Systems (ACIVS), Poitiers, France, 2018
[24] Catarina Barata, Jacinto Nascimento, Jorge Salvador Marques, "Improving a Switched Vector Field Model for Pedestrian Motion Analysis", Concepts for Intelligent Vision Systems (ACIVS). Poitiers, France, 2018
[25] Catarina Barata, Jacinto Nascimento, Jorge Salvador Marques, "A Sparse Approach to Pedestrian Trajectory Modeling using Multiple Motion Fields", Proc. of ICIP 2017 - IEEE International Conference on Image Processing, Beijing, China, 2017
[26] Catarina Barata, M. A. T. Figueiredo, M. E. Celebi, Jorge Salvador Marques, "Local Features Applied to Dermoscopy Images: Bag-of-Features versus Sparse Coding", Proc. of IbPRIA 2017 - 8th Iberian Conference on Pattern Recognition and Image Analysis Faro, Portugal, 2017
[27] Catarina Barata, M. E. Celebi, Jorge Salvador Marques, "A System for the Analysis of Dermoscopy Images Using Weak Annotations", Proc. of RecPad 2016 - 22nd edition of the Portuguese Conference on Pattern Recognition, Aveiro, Portugal, 2016 - PDF
[28] Catarina Barata, M. E. Celebi, Jorge Salvador Marques, "A Clinically Oriented System for Melanoma Diagnosis Using a Color Representation", Proc. of EMBC 2015 - 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Milano, Italy, 2015
[29] Catarina Barata, M. Celebi, Jorge Salvador Marques, "Melanoma detection algorithm based on feature fusion", Proc. of EMBC 2015 - 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Milano, Italy, 2015
[30] Catarina Barata, M. Celebi, Jorge Salvador Marques, "Improving Dermoscopy Image Analysis Using Color Constancy", Proc. of ICIP 2014 - IEEE International Conference on Image Processing, Paris, France, 2014 - PDF
[31] Catarina Barata, M. Figueiredo, M. Celebi, Jorge Salvador Marques, "Color Identification in Dermoscopy Images using Gaussian Mixture Models", Proc. of ICASSP 2014 - IEEE International Conference on Acoustics, Speech and Signal Processing, Florence, Italy, 2014 - PDF
[32] M. Ruela, Catarina Barata, T. Mendonca, Jorge Salvador Marques, "On the role of shape in the detection of melanomas", Proc. of ISPA 2013 - IEEE International Symposium on Image and Signal Processing and Analysis, Trieste, Italy, 2013 - PDF
[33] Ana Ruela, M. Ruela, Catarina Barata, T. Mendonca, Jorge Salvador Marques, "What is the Role of Color in Dermoscopy Analysis?", Proc. of IbPRIA 2013 - 6th Iberian Conference on Pattern Recognition and Image Analysis, Madeira, Portugal, pp. 819-826, 2013
[34] Catarina Barata, Jorge Salvador Marques, T. Mendonca, "Bag-of-Features Classification Model for the Diagnose of Melanoma in Dermoscopy Images using Color and Texture Descriptors", Proc. of ICIAR 2013 - 11th International Conference on Image Analysis and Recognition, Povoa de Varzim, Portugal, pp. 547-555, 2013
[35] Catarina Barata, Jorge Salvador Marques, J. Rozeira, "Evaluation of Color Based Keypoints and Features for the Classification of Melanomas Using the Bag-of-Features Model", Proc. of ISVC 2013 - 9th International Symposium on Visual Computing, Crete, Greece, pp. 40-49, 2013
[36] M. Ruela, Catarina Barata, Jorge Salvador Marques, "What is the Role of Color Symmetry in the Detection of Melanomas?", Proc. of ISVC 2013 - 9th International Symposium on Visual Computing, Crete, Greece, pp. 1-10, 2013
[37] Catarina Barata, Jorge Salvador Marques, M. E. Celebi, "Towards an Automatic Bag-of-Features Model for the Classification of Dermoscopy Images: The Influence of Segmentation", Proc. of ISPA 2013 - 8th International Symposium on Image and Signal Processing and Analysis, Trieste, Italy, pp. 274-279, 2013
[38] Catarina Barata, Jorge Salvador Marques, J. Rozeira, "The Role of Keypoint Sampling on the Classication of Melanomas in Dermoscopy Images Using Bag-of-Features", Proc. of IbPRIA 2013 - 6th Iberian Conference on Pattern Recognition and Image Analysis, Madeira, Portugal, pp. 715-723, 2013
[39] Jorge Salvador Marques, Catarina Barata, T. Mendonca, "On the role of texture and color in the classification of dermoscopy images", Proc. of EMBC 2012 - 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San Diego, CA, USA, pp. 44024405, 2012
[40] Catarina Barata, Jorge Salvador Marques, J. Rozeira, "A system for the automatic detection of pigment network", Proc. of ISBI 2012 - IEEE International Symposium on Biomedical Imaging, Barcelona, Spain, pp. 16511654, 2012
[1] Catarina Barata, "Automatic Detection of Melanomas Using Dermoscopy Images", Ph.D. Thesis, Instituto Superior Tecnico, Universidade de Lisboa, April, 2017
[1] M. E. Celebi, Catarina Barata, Allan Halpern, Philipp Tschandl, Marc Combalia, Yuan Liu, "Guest editorial: Image analysis in dermatology", Medical Image Analysis, 79:102468, July, 2022
[1] M. E. Celebi, Catarina Barata, Allan Halpern, Philipp Tschandl, Marc Combalia, Yuan Liu, "Guest editorial: Image analysis in dermatology", Medical Image Analysis, 79:102468, July, 2022
In the same group
Catarina Barata
Alexandre Bernardino
Ayman Bnoussaad
Carlos Cardoso
Ana Rita Coias
Bruno Damas
Atabak Dehban
Bernardo Colaço Dias
Dimitris Dimou
Nuno Duarte
José Gaspar
José Gomes
Jorge Gonçalves
Lorenzo Jamone
Akhil John
Min Lee
Manuel Lopes
Plinio Moreno
Luka Lukić
João Maciel
Jorge Salvador Marques
Anastasiia Mikhailova
Luis Montesano
Nuno Moutinho
Mehmet Mutlu
Athira Nambiar
Milad Niknejad
Manuel Nunes
Nuno Pessanha Santos
Ricardo Ribeiro
David Ribeiro
Giampiero Salvi
Laura Santos
José Santos-Victor
Giovanni Saponaro
Paul Schydlo
Rita Verdelho